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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36956186_36958413_R

Intron Information:

Intron Rank:
147562
Intron Class:
major
Intron Phase:
Intron Coordinates:
36956186 - 36958413
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
TGCCGATTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTCTCATACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
68.6
39.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
65.6
0.35
1
62.7
42.2
Minor 5ss
43.7
-0.7
3
55.8
43
Minor BPS
48.1
-0.1
1.8
62.7
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026756
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032441
36955757 - 36958992
3236