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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3700401_3700743_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3700401 - 3700743
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCGAT
5'SS Class:
major
3'SS Sequence:
TGTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TAGACATAAAGT
Flanking Amino Acid:
ELNRENEEEKVAFNLNKGAS
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.3
39.5
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
43.5
-0.7
3.3
64.1
47.4
Minor BPS
44.8
-0.3
2.2
63.03
46.5

Associated Gene:

Gene:
KIN
Ensembl Gene ID:
ENSAPLG00000008247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008591
3692459 - 3705860
13402