About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3700793_3701928_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3700793 - 3701928
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
ATTCTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCTTTCTGAAAT
Flanking Amino Acid:
VRRGLEGKELEAPVYTELNR
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
72.7
33.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.6
0.67
1
77
36.5
Minor 5ss
26.3
-2.7
2.9
27.3
37.8
Minor BPS
60.9
0.42
1.6
74.71
41.6

Associated Gene:

Gene:
KIN
Ensembl Gene ID:
ENSAPLG00000008247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008591
3692459 - 3705860
13402