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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3702111_3703010_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3702111 - 3703010
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGAGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTAATTTAACT
Flanking Amino Acid:
TDFTKWLGREGLCKVDETPK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
71.2
40.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.7
0.6
0.9
73.8
41.4
Minor 5ss
29
-2.4
2.7
33.4
41.8
Minor BPS
69.6
0.69
1.5
84.39
35.6

Associated Gene:

Gene:
KIN
Ensembl Gene ID:
ENSAPLG00000008247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008591
3692459 - 3705860
13402