About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3705696_3707224_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3705696 - 3707224
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACGGGA
5'SS Class:
major
3'SS Sequence:
ATTAACCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CATCCATTAACC
Flanking Amino Acid:
ALPSRFTSRHVTRRLKSIKN
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
56.7
42.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
69.9
0.45
0.9
59.8
41.8
Minor 5ss
34.3
-1.8
3.6
43.9
45.7
Minor BPS
63.9
0.42
1.6
70.71
39.9

Associated Gene:

Gene:
ATP5F1C
Ensembl Gene ID:
ENSAPLG00000007987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017814
3704832 - 3712111
7280