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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3707357_3708032_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3707357 - 3708032
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ACTTACTTATTT
Flanking Amino Acid:
PARIYGTGALALYEKAEIKV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.4
33.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
23.9
-3
3
20.8
37.5
Minor BPS
58.9
0.36
1.8
75.17
41.9

Associated Gene:

Gene:
ATP5F1C
Ensembl Gene ID:
ENSAPLG00000007987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047679
3704832 - 3712111
7280
ENSAPLT00000017814
3704832 - 3712111
7280
ENSAPLT00000008325
3704832 - 3712631
7800