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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37077350_37077870_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37077350 - 37077870
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
AGTGTTTTAGTT
Flanking Amino Acid:
SMFPHRSEKDAMLQKWILGW
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71
40.9
Major BPS
67.6
0.44
1.2
75
40
Major PPT
78.4
0.64
0.8
73.7
30.6
Minor 5ss
36
-1.6
3
45.8
42.4
Minor BPS
50
0.08
1.6
66.05
39.5

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013241
37057117 - 37112323
55207