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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37077350_37087267_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37077350 - 37087267
Intron Length:
9918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
SMFPHRSEKDMLASPSTSGQ
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71
40.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
75.8
37.9
Minor 5ss
36
-1.6
3
45.8
42.4
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021039
37057117 - 37112323
55207