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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37077919_37087267_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37077919 - 37087267
Intron Length:
9349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
ILGWDFKRRKMLASPSTSGQ
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
75.8
37.9
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013241
37057117 - 37112323
55207