About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3708238_3708704_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3708238 - 3708704
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTGTTACTG
Flanking Amino Acid:
VGDKIRGLLQRTHSNYFLMT
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.8
0.76
0.8
78.5
34.7
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
49.7
-0.1
2.3
66.07
42.7

Associated Gene:

Gene:
ATP5F1C
Ensembl Gene ID:
ENSAPLG00000007987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047679
3704832 - 3712111
7280
ENSAPLT00000017814
3704832 - 3712111
7280
ENSAPLT00000008325
3704832 - 3712631
7800