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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37087335_37090449_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37087335 - 37090449
Intron Length:
3115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
QFGASLYGQQSALGLPMRGM
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021039
37057117 - 37112323
55207
ENSAPLT00000013241
37057117 - 37112323
55207