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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3708849_3709246_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3708849 - 3709246
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTATACA
Flanking Amino Acid:
DEGSVIFNRFRSVISYKTDE
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.6
0.94
0.7
88.3
27.8
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
55.3
0.16
2
74.12
37.8

Associated Gene:

Gene:
ATP5F1C
Ensembl Gene ID:
ENSAPLG00000007987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008325
3704832 - 3712631
7800
ENSAPLT00000047679
3704832 - 3712111
7280
ENSAPLT00000017814
3704832 - 3712111
7280