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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37090598_37091207_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37090598 - 37091207
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
ATAGATTCATCT
Flanking Amino Acid:
MSLHTPPSPSRGILPMNPRN
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
71.4
0.53
1
67
39.8
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
43.4
-0.4
1.9
60.41
43

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021039
37057117 - 37112323
55207
ENSAPLT00000013241
37057117 - 37112323
55207