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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37091391_37094217_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37091391 - 37094217
Intron Length:
2827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
QPSRQPFTVNSMSGFGMNRN
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
79
0.72
1
69
38.9
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021039
37057117 - 37112323
55207
ENSAPLT00000013241
37057117 - 37112323
55207