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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3709312_3709917_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3709312 - 3709917
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCGTATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTTCTCTGAATC
Flanking Amino Acid:
IFSFETVAGAESLSIYDDID
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
78.2
0.63
0.9
71.5
38
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
67.7
0.53
1.4
76.51
33.1

Associated Gene:

Gene:
ATP5F1C
Ensembl Gene ID:
ENSAPLG00000007987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047679
3704832 - 3712111
7280
ENSAPLT00000017814
3704832 - 3712111
7280
ENSAPLT00000008325
3704832 - 3712631
7800