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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37094298_37095527_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37094298 - 37095527
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CCTGCTTTTATT
Flanking Amino Acid:
SLSSNIFNGTDGSENVTGLD
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.7
0.65
0.8
73.3
35.9
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
51.8
0.14
1.8
66.64
45

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013241
37057117 - 37112323
55207
ENSAPLT00000021039
37057117 - 37112323
55207