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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37100265_37103227_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37100265 - 37103227
Intron Length:
2963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAATTCATATTT
Flanking Amino Acid:
TTLGLNLNSPENLYPKFASP
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76
34.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
93.1
0.97
0.6
92.3
18
Minor 5ss
46
-0.4
2.7
58.2
40.5
Minor BPS
48.2
-0
1.8
65.2
39.2

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013241
37057117 - 37112323
55207
ENSAPLT00000021039
37057117 - 37112323
55207