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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37104380_37104928_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37104380 - 37104928
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTACGTTCA
5'SS Class:
major
3'SS Sequence:
TTGAAAATAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TCCTATTGAAAA
Flanking Amino Acid:
DVLQLLAAVELFNRDWRYHK
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
62.1
39
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
49.3
-0
1.2
47.3
42.8
Minor 5ss
42.3
-0.8
3
59.8
44.6
Minor BPS
48.3
-0.1
1.7
58.17
41.3

Associated Gene:

Gene:
CNOT2
Ensembl Gene ID:
ENSAPLG00000012657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013241
37057117 - 37112323
55207
ENSAPLT00000021039
37057117 - 37112323
55207