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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37120989_37121184_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37120989 - 37121184
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGTATGTG
5'SS Class:
weak_major
3'SS Sequence:
CTGTCTATATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTCATATCT
Flanking Amino Acid:
MCTIYVHIHIHI
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
58.2
40.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
60.7
0.24
1.1
65.7
38.8
Minor 5ss
37.7
-1.4
3.3
46.8
42.9
Minor BPS
53.8
0.2
1.9
74.87
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036502
37120981 - 37123958
2978