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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37121335_37121379_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37121335 - 37121379
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCTAGA
5'SS Class:
weak_major
3'SS Sequence:
TCATATCTATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTCATATCT
Flanking Amino Acid:
KCVCVPIYTHLIYVCIYIHT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.3
54.9
43.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
60.8
0.24
1.1
65.5
39.7
Minor 5ss
49.6
-0
2.3
68.8
42
Minor BPS
53.8
0.2
1.9
74.87
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023725
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036502
37120981 - 37123958
2978