About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37149442_37151115_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37149442 - 37151115
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AGTGACTTAAAA
Flanking Amino Acid:
LHRVHMVQTECQYVYLHQCV
Intron Amino Acid Position:
1953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.6
0.73
0.9
77.2
36.4
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
55.1
0.16
1.7
65.26
40.4

Associated Gene:

Gene:
PTPRB
Ensembl Gene ID:
ENSAPLG00000013391
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014019
37148170 - 37191646
43477
ENSAPLT00000024261
37148170 - 37206747
58578
ENSAPLT00000023708
37146965 - 37206747
59783