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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37151881_37152109_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37151881 - 37152109
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TGTACCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTACCCCAACA
Flanking Amino Acid:
WTIREFKICSEEQLDSTRLI
Intron Amino Acid Position:
1853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.7
40.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
66.1
0.36
1
59.5
36.8
Minor 5ss
45.8
-0.4
2.8
59.1
45.3
Minor BPS
53.7
0.11
2
70.76
40.5

Associated Gene:

Gene:
PTPRB
Ensembl Gene ID:
ENSAPLG00000013391
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024261
37148170 - 37206747
58578
ENSAPLT00000023708
37146965 - 37206747
59783
ENSAPLT00000014019
37148170 - 37191646
43477