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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37158028_37158140_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37158028 - 37158140
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACATCA
5'SS Class:
major
3'SS Sequence:
ATACCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
LAVHLNLGQKGNRKTCSPIK
Intron Amino Acid Position:
1677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
62.3
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.8
0.42
0.9
59.5
41.1
Minor 5ss
43.3
-0.7
2.9
49
46.7
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
PTPRB
Ensembl Gene ID:
ENSAPLG00000013391
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024261
37148170 - 37206747
58578
ENSAPLT00000023708
37146965 - 37206747
59783
ENSAPLT00000014019
37148170 - 37191646
43477