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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37158225_37159138_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37158225 - 37159138
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TGTAGTAAAACA
Flanking Amino Acid:
TALFVCRQKVGNGHERPAAR
Intron Amino Acid Position:
1649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
91.3
0.93
0.7
84.6
36
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
42.4
-0.5
2.2
57.49
41.9

Associated Gene:

Gene:
PTPRB
Ensembl Gene ID:
ENSAPLG00000013391
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024261
37148170 - 37206747
58578
ENSAPLT00000023708
37146965 - 37206747
59783
ENSAPLT00000014019
37148170 - 37191646
43477