Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37159884_37161047_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37159884 - 37161047

Intron Length:

1164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTCAGATTT

5'SS Class:

major

3'SS Sequence:

CTGTTTTATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TAAGCTTTAACT

Flanking Amino Acid:

DGPLKPRTAYRISIRAFTQL

Intron Amino Acid Position:

1580

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

1.2

81.6

33.2

Major BPS

81.9

0.79

0.8

81.9

Major PPT

77.9

0.63

0.9

77.7

35.8

Minor 5ss

39.3

-1.2

3.2

56.7

47.5

Minor BPS

73.2

0.81

1.3

81.94

39.4

Associated Gene:

Gene:

PTPRB

Ensembl Gene ID:

ENSAPLG00000013391

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024261

37148170 - 37206747

58578

ENSAPLT00000023708

37146965 - 37206747

59783

ENSAPLT00000014019

37148170 - 37191646

43477