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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37164561_37165799_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37164561 - 37165799
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
AACATCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGAACTTTAATT
Flanking Amino Acid:
SQAQSASVRTKPDKIQSLHC
Intron Amino Acid Position:
1356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
65.3
0.35
0.9
55.5
40.3
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
70.2
0.71
1.2
78.45
37.7

Associated Gene:

Gene:
PTPRB
Ensembl Gene ID:
ENSAPLG00000013391
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024261
37148170 - 37206747
58578
ENSAPLT00000023708
37146965 - 37206747
59783
ENSAPLT00000014019
37148170 - 37191646
43477