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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37171783_37172767_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37171783 - 37172767
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GAGTCTTTAATT
Flanking Amino Acid:
ENYSFSQERTVPSSVQGLTV
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
71.3
40.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
32.9
-1.9
2.9
41.7
44.7
Minor BPS
72.9
0.8
1.2
77.69
39

Associated Gene:

Gene:
PTPRB
Ensembl Gene ID:
ENSAPLG00000013391
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024261
37148170 - 37206747
58578
ENSAPLT00000023708
37146965 - 37206747
59783
ENSAPLT00000014019
37148170 - 37191646
43477