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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37218830_37220039_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37218830 - 37220039
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGTC
5'SS Class:
major
3'SS Sequence:
ATGTTATGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
GTGCCTATAAAA
Flanking Amino Acid:
NYTVRQLTIKQGSQSQSVKH
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
73.3
36.4
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
71.4
0.48
1.1
62.9
47
Minor 5ss
40.5
-1.1
3.5
59
45.7
Minor BPS
49
-0
1.7
60.11
39.2

Associated Gene:

Gene:
PTPRR
Ensembl Gene ID:
ENSAPLG00000014776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015425
37207467 - 37348307
140841