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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37220151_37226528_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37220151 - 37226528
Intron Length:
6378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTTTCCTGATGA
Flanking Amino Acid:
MITKLKEKNEKCVLYWPEKR
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
78.4
0.64
0.9
70
41.4
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
52
0.06
2
69.18
42.8

Associated Gene:

Gene:
PTPRR
Ensembl Gene ID:
ENSAPLG00000014776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015425
37207467 - 37348307
140841