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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37226667_37228749_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37226667 - 37228749
Intron Length:
2083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAACC
Flanking Amino Acid:
STYINANYIRGYGGKEKAFI
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
67.5
0.4
1.1
60.8
43.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
69.9
0.6
1.6
78.59
37

Associated Gene:

Gene:
PTPRR
Ensembl Gene ID:
ENSAPLG00000014776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015425
37207467 - 37348307
140841