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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37228830_37235591_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37228830 - 37235591
Intron Length:
6762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATT
Flanking Amino Acid:
TKNRYKTILPNPLSRVYLKP
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.1
0.5
0.9
69.5
36.8
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
64.6
0.54
1.5
79.05
38

Associated Gene:

Gene:
PTPRR
Ensembl Gene ID:
ENSAPLG00000014776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015425
37207467 - 37348307
140841