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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37235677_37241082_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37235677 - 37241082
Intron Length:
5406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTATTTAATT
Flanking Amino Acid:
CSHLLQTEFMEIPMNFVDPK
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.8
0.85
0.7
84.4
30.4
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
72.5
0.78
1.4
84.41
36.8

Associated Gene:

Gene:
PTPRR
Ensembl Gene ID:
ENSAPLG00000014776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015425
37207467 - 37348307
140841