Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37275150_37278254_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37275150 - 37278254

Intron Length:

3105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TTTATTTTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTA

Flanking Amino Acid:

PQQVHINRLIGKKNCVELFI

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

73.6

35.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.1

0.74

0.8

77.2

36.9

Minor 5ss

39.6

-1.2

2.7

53.3

37.4

Minor BPS

67.9

0.56

1.5

78.16

Associated Gene:

Gene:

PTPRR

Ensembl Gene ID:

ENSAPLG00000014776

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015425

37207467 - 37348307

140841