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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3728256_3803633_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3728256 - 3803633
Intron Length:
75378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGAAT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
YMPPIVSSQEEEEEEQVPTD
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.9
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.9
0.85
0.8
83.2
32
Minor 5ss
27.4
-2.6
3.3
38.8
46.5
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
TAF3
Ensembl Gene ID:
ENSAPLG00000010030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046451
3718350 - 3806958
88609
ENSAPLT00000010448
3718350 - 3830929
112580