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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37338484_37348246_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37338484 - 37348246
Intron Length:
9763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACATTCTTAACT
Flanking Amino Acid:
LCLLLQLRAAGCFSGDNDHF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
77.6
0.95
1.1
82.83
38.2

Associated Gene:

Gene:
PTPRR
Ensembl Gene ID:
ENSAPLG00000014776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015425
37207467 - 37348307
140841