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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37388730_37390464_R

Intron Information:

Intron Rank:
141115
Intron Class:
major
Intron Phase:
Intron Coordinates:
37388730 - 37390464
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGTTCCTGATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81.1
0.7
0.8
75.7
32.7
Minor 5ss
40.1
-1.1
3.4
52.2
46
Minor BPS
51.4
0.02
2
68.17
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036971
37388389 - 37390761
2373