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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37388734_37389903_R

Intron Information:

Intron Rank:
141113
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
37388734 - 37389903
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-TT
5'SS Sequence:
TGT|GTGAGTCAA
5'SS Class:
major
3'SS Sequence:
CTTTTCCTCTGTT|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGTTCCTGATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
63.2
38.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
20.4
-1.7
4.3
61.7
39.9
Minor 5ss
30.1
-2.3
2.9
32.9
41.9
Minor BPS
51.4
0.02
2
68.17
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018599
37388054 - 37390761
2708