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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37390022_37390464_R

Intron Information:

Intron Rank:
141114
Intron Class:
major
Intron Phase:
Intron Coordinates:
37390022 - 37390464
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCTGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CTCAGAGTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.5
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
67
0.38
1.7
80.5
37
Minor 5ss
40.1
-1.1
3.4
52.2
46
Minor BPS
34.4
-1.3
2.4
37.95
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018599
37388054 - 37390761
2708