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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37426409_37428984_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37426409 - 37428984
Intron Length:
2576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGTA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AATACCAGAAAT
Flanking Amino Acid:
GIAFGLAVIEILGLGFSMSL
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
66.3
39.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
38.5
-1.3
3.7
56.1
48.1
Minor BPS
48.2
-0
1.8
68.68
40.7

Associated Gene:

Gene:
TSPAN8
Ensembl Gene ID:
ENSAPLG00000015637
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029650
37426355 - 37505746
79392
ENSAPLT00000023639
37426355 - 37447278
20924
ENSAPLT00000016303
37426355 - 37504217
77863