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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37434524_37435150_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37434524 - 37435150
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTCTGTACCT
Flanking Amino Acid:
IKESRCMLLLFFIGLLLILI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.2
0.68
0.8
73.6
37
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
60.1
0.4
2.3
87.23
39

Associated Gene:

Gene:
TSPAN8
Ensembl Gene ID:
ENSAPLG00000015637
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029650
37426355 - 37505746
79392
ENSAPLT00000023639
37426355 - 37447278
20924
ENSAPLT00000016303
37426355 - 37504217
77863