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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37438014_37441854_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37438014 - 37441854
Intron Length:
3841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
SMFIFNFLFWVCGSVILGVS
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
63.6
48.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
33.2
-1.9
2.8
33.1
41.8
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
TSPAN8
Ensembl Gene ID:
ENSAPLG00000015637
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023639
37426355 - 37447278
20924