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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37441925_37446937_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37441925 - 37446937
Intron Length:
5013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
ATTTTTGTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCTGCAATT
Flanking Amino Acid:
VSKDHRGLLSSFLKMAGVSS
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
0.8
77.6
36.1
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
51.1
0.11
2.2
75.4
42.3

Associated Gene:

Gene:
TSPAN8
Ensembl Gene ID:
ENSAPLG00000015637
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023639
37426355 - 37447278
20924