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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37526565_37562579_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37526565 - 37562579
Intron Length:
36015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
TTTTCCCCTACA
Flanking Amino Acid:
PADLSAFTSYLDLSMNNITK
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
63.9
41
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
87.2
0.84
0.7
81.3
24
Minor 5ss
35.9
-1.6
3.3
53.5
43.7
Minor BPS
53.7
0.11
2.2
77.11
39.2

Associated Gene:

Gene:
LGR5
Ensembl Gene ID:
ENSAPLG00000015737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016406
37526350 - 37615570
89221