Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37578317_37591796_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37578317 - 37591796

Intron Length:

13480

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

TGTTCCCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

CTTTCCTGACTG

Flanking Amino Acid:

ALQNLHSLQSLHLHNNRIYS

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

70.1

35.6

Major BPS

69.2

0.48

1.3

71.9

Major PPT

80.8

0.69

0.8

74.3

30.8

Minor 5ss

33.5

-1.9

2.7

44.7

42.7

Minor BPS

55.5

0.04

1.9

63.83

44.5

Associated Gene:

Gene:

LGR5

Ensembl Gene ID:

ENSAPLG00000015737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016406

37526350 - 37615570

89221