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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37591869_37594342_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37591869 - 37594342
Intron Length:
2474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TGTTTTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGTTTTCACA
Flanking Amino Acid:
CFDGLHSLETLDLNYNSLDE
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
65.8
36
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.9
0.63
0.9
73.2
36.4
Minor 5ss
36.7
-1.5
2.9
46
43.6
Minor BPS
52.4
0.07
1.8
65.59
41.9

Associated Gene:

Gene:
LGR5
Ensembl Gene ID:
ENSAPLG00000015737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016406
37526350 - 37615570
89221