About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37596562_37597370_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37596562 - 37597370
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTATTATAATG
Flanking Amino Acid:
AFVGNPSLITIHFYDNPIQL
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
54.5
0
1.7
64.3
38.1

Associated Gene:

Gene:
LGR5
Ensembl Gene ID:
ENSAPLG00000015737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016406
37526350 - 37615570
89221