About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37597443_37597546_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37597443 - 37597546
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTAAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATATTGAAAT
Flanking Amino Acid:
AFQHLPELRTLTLNGASQIT
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
71.2
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.6
0.6
0.9
68.1
42.1
Minor 5ss
47.6
-0.2
3.2
76.1
39.5
Minor BPS
55.8
0.26
1.7
76.49
39.3

Associated Gene:

Gene:
LGR5
Ensembl Gene ID:
ENSAPLG00000015737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016406
37526350 - 37615570
89221