About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37597816_37600588_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37597816 - 37600588
Intron Length:
2773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTACGTTTC
5'SS Class:
major
3'SS Sequence:
TTGTGTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAAATATTAATC
Flanking Amino Acid:
ACDQLPNLQVLDLSYNLLED
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
66.7
39.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.8
0.67
0.9
73.3
40.8
Minor 5ss
46.6
-0.3
3
70.7
39.7
Minor BPS
54.1
0.11
1.6
62.35
36.5

Associated Gene:

Gene:
LGR5
Ensembl Gene ID:
ENSAPLG00000015737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016406
37526350 - 37615570
89221