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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37600655_37600864_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37600655 - 37600864
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCTTC
5'SS Class:
major
3'SS Sequence:
ATTGCTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCCTTGTAAACT
Flanking Amino Acid:
CFTACKKLQKIDLHHNEIDE
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.2
35.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.5
0.64
0.9
74.7
39.3
Minor 5ss
53
0.1
2.7
72.5
37.4
Minor BPS
46.1
-0.2
2.3
63.23
47.2

Associated Gene:

Gene:
LGR5
Ensembl Gene ID:
ENSAPLG00000015737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016406
37526350 - 37615570
89221