About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_37604011_37609975_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37604011 - 37609975
Intron Length:
5965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTACTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
TGTTCTTCTACT
Flanking Amino Acid:
LISSENFPELKVMEMPYAYQ
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
83.1
0.75
0.8
77.3
30
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
60.4
0.41
1.9
81.29
40.1

Associated Gene:

Gene:
LGR5
Ensembl Gene ID:
ENSAPLG00000015737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016406
37526350 - 37615570
89221